PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013627460.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 238aa    MW: 25930.9 Da    PI: 7.6313
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013627460.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.42.4e-38151151100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC +dC++apyf +eq +++fa++hk+FGasnv+kll ++p ++r +a+ +++yeA+ar++dPvyG+v++i++lqqq++ l+a++
  XP_013627460.1  15 PCGACKFLRRKCLSDCIFAPYFSSEQgAERFAAIHKVFGASNVSKLLLKVPIHDRCEAVVTIAYEAQARLHDPVYGCVSHIFSLQQQVAYLQAQV 109
                     7***********************9989******************************************************************9 PP

          DUF260  95 allkee 100
                      ++k++
  XP_013627460.1 110 MQMKAH 115
                     988876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.61114116IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-3715113IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MATSGNSTTV GTGTPCGACK FLRRKCLSDC IFAPYFSSEQ GAERFAAIHK VFGASNVSKL  60
LLKVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFSLQQ QVAYLQAQVM QMKAHIAGHQ  120
TSAAEGTHQF ATWQQTSGSP IDSAYSTPYN HHHHTHYGHI NPNNPVSPQS SLEESFSNTS  180
SDVTTTANVR ETHQTGGGVY GQGELGFQEG LPNKKRSVRY CDSDLGELQA LALRMMKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2411040.0AC241104.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH017L09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627460.10.0PREDICTED: LOB domain-containing protein 16-like
SwissprotQ9SLB71e-152LBD16_ARATH; LOB domain-containing protein 16
TrEMBLA0A0D3B6C80.0A0A0D3B6C8_BRAOL; Uncharacterized protein
STRINGBra000257.1-P1e-173(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.11e-116lateral organ boundaries-domain 16